Add basic BEGIN_SRC block support.
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@ -63,10 +63,10 @@ ACTIVE_TIME_STAMP_RE = re.compile(r"<{}>".format(BASE_TIME_STAMP_RE))
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INACTIVE_TIME_STAMP_RE = re.compile(r"\[{}\]".format(BASE_TIME_STAMP_RE))
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# Org-Babel
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BEGIN_SRC_RE = re.compile(r"^\s*#\+BEGIN_SRC(\s+(?P<content>.*))?$")
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END_SRC_RE = re.compile(r"^\s*#\+END_SRC\s*$")
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RESULTS_DRAWER_RE = re.compile(r"^\s*:results:\s*$")
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BEGIN_SRC_RE = re.compile(r"^\s*#\+BEGIN_SRC(?P<content>.*)$", re.I)
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END_SRC_RE = re.compile(r"^\s*#\+END_SRC\s*$", re.I)
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RESULTS_DRAWER_RE = re.compile(r"^\s*:results:\s*$", re.I)
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CodeSnippet = collections.namedtuple("CodeSnippet", ("name", "content", "result"))
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# BASE_TIME_RANGE_RE = (r'(?P<start_year>\d{4})-(?P<start_month>\d{2})-(?P<start_day>\d{2}) (?P<start_dow>[^ ]+)((?P<start_hour>\d{1,2}):(?P<start_minute>\d{1,2}))?',
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# r'(?P<end_year>\d{4})-(?P<end_month>\d{2})-(?P<end_day>\d{2}) (?P<end_dow>[^ ]+)((?P<end_hour>\d{1,2}):(?P<end_minute>\d{1,2}))?')
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@ -122,6 +122,7 @@ class Headline:
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contents,
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children,
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structural,
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delimiters,
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):
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self.start_line = start_line
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self.depth = depth
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@ -137,11 +138,112 @@ class Headline:
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self.contents = contents
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self.children = children
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self.structural = structural
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self.delimiters = delimiters
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def get_links(self):
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for content in self.contents:
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yield from get_links_from_content(content)
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def get_lines_between(self, start, end):
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for line in self.contents:
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if start <= line.linenum < end:
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yield "".join(line.contents)
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def get_element_in_line(self, linenum):
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for line in self.contents:
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if linenum == line.linenum:
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return line
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for (s_lnum, struc) in self.structural:
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if linenum == s_lnum:
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return ("structural", struc)
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def get_structural_end_after(self, linenum):
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for (s_lnum, struc) in self.structural:
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if s_lnum > linenum and struc.strip().upper() == ":END:":
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return (s_lnum, struc)
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def get_code_snippets(self):
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inside_code = False
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sections = []
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for delimiter in self.delimiters:
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if delimiter.delimiter_type == DelimiterLineType.BEGIN_SRC:
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line_start = delimiter.linenum
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inside_code = True
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elif delimiter.delimiter_type == DelimiterLineType.END_SRC:
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inside_code = False
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start, end = line_start, delimiter.linenum
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lines = self.get_lines_between(start + 1, end)
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contents = "\n".join(lines)
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if contents.endswith("\n"):
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# This is not ideal, but to avoid having to do this maybe
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# the content parsing must be re-thinked
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contents = contents[:-1]
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sections.append(
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{
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"line_first": start + 1,
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"line_last": end - 1,
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"content": contents,
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}
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)
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line_start = None
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for kword in self.keywords:
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if kword.key.upper() == "RESULTS":
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for snippet in sections:
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if kword.linenum > snippet["line_last"]:
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result_first = self.get_element_in_line(kword.linenum + 1)
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if isinstance(result_first, Text):
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result = "\n".join(result_first.contents)
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snippet["result"] = result
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if result.strip().startswith(": "):
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# Split lines and remove ':'
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lines = result.split("\n")
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s_result = []
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for line in lines:
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if ": " not in line:
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break
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s_result.append(line.lstrip(" ")[2:])
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snippet["result"] = "\n".join(s_result)
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elif (
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isinstance(result_first, tuple)
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and len(result_first) == 2
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and result_first[0] == "structural"
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and result_first[1].strip().upper() == ":RESULTS:"
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):
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(end_line, _) = self.get_structural_end_after(
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kword.linenum + 1
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)
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contents = "\n".join(
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self.get_lines_between(kword.linenum + 1, end_line)
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)
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indentation = result_first[1].index(":")
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dedented = "\n".join(
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[line[indentation:] for line in contents.split("\n")]
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)
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if dedented.endswith("\n"):
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dedented = dedented[:-1]
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snippet["result"] = dedented
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break
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results = []
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for section in sections:
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name = None
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content = section["content"]
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code_result = section.get("result", None)
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results.append(CodeSnippet(name=name, content=content, result=code_result))
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return results
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RawLine = collections.namedtuple("RawLine", ("linenum", "line"))
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Keyword = collections.namedtuple(
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@ -159,6 +261,16 @@ Timestamp = collections.namedtuple(
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)
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class DelimiterLineType(Enum):
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BEGIN_SRC = 1
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END_SRC = 2
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DelimiterLine = collections.namedtuple(
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"DelimiterLine", ("linenum", "line", "delimiter_type")
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)
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class MarkerType(Enum):
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NO_MODE = 0b0
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BOLD_MODE = 0b1
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@ -573,7 +685,7 @@ def parse_contents(raw_contents: List[RawLine]):
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current_block.append(line)
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else:
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# Mark the finishing block as not the last line
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current_block.append(RawLine(current_line + 1, ''))
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current_block.append(RawLine(current_line + 1, ""))
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# Split the blocks
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blocks.append(current_block)
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current_line = line.linenum
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@ -633,6 +745,7 @@ def parse_headline(hl) -> Headline:
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keywords=hl["keywords"],
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properties=hl["properties"],
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structural=hl["structural"],
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delimiters=hl["delimiters"],
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title_start=None,
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priority=None,
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priority_start=None,
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@ -664,6 +777,10 @@ class OrgDom:
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def getTopHeadlines(self):
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return self.headlines
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def get_code_snippets(self):
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for headline in self.headlines:
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yield from headline.get_code_snippets()
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# Writing
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def dump_kw(self, kw):
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options = kw.match.group("options")
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@ -711,6 +828,9 @@ class OrgDom:
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def dump_structural(self, structural: Tuple):
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return (structural[0], structural[1])
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def dump_delimiters(self, line: DelimiterLine):
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return (line.linenum, line.line)
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def dump_headline(self, headline):
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yield "*" * headline.depth + " " + headline.orig.group(
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"spacing"
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@ -733,6 +853,9 @@ class OrgDom:
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for struct in headline.structural:
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lines.append((STRUCTURAL_T, self.dump_structural(struct)))
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for content in headline.delimiters:
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lines.append((STRUCTURAL_T, self.dump_delimiters(content)))
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lines = sorted(lines, key=lambda x: x[1][0])
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structured_lines = []
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@ -793,6 +916,7 @@ class OrgDomReader:
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self.keywords: List[Property] = []
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self.headline_hierarchy: List[OrgDom] = []
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self.contents: List[RawLine] = []
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self.delimiters: List[DelimiterLine] = []
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def finalize(self):
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return OrgDom(self.headlines, self.keywords, self.contents)
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@ -811,9 +935,10 @@ class OrgDomReader:
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"children": [],
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"keywords": [],
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"properties": [],
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"results": [], # TODO: Move to each specific code block
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"logbook": [],
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"structural": [],
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"delimiters": [],
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"results": [], # TODO: Move to each specific code block?
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}
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while (depth - 2) > len(self.headline_hierarchy):
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@ -850,18 +975,18 @@ class OrgDomReader:
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self.headline_hierarchy[-1]["contents"].append(raw)
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def add_begin_src_line(self, linenum: int, match: re.Match) -> int:
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raw = RawLine(linenum, match.group(0))
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line = DelimiterLine(linenum, match.group(0), DelimiterLineType.BEGIN_SRC)
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if len(self.headline_hierarchy) == 0:
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self.contents.append(raw)
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self.delimiters.append(line)
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else:
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self.headline_hierarchy[-1]["contents"].append(raw)
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self.headline_hierarchy[-1]["delimiters"].append(line)
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def add_end_src_line(self, linenum: int, match: re.Match) -> int:
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raw = RawLine(linenum, match.group(0))
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line = DelimiterLine(linenum, match.group(0), DelimiterLineType.END_SRC)
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if len(self.headline_hierarchy) == 0:
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self.contents.append(raw)
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self.delimiters.append(line)
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else:
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self.headline_hierarchy[-1]["contents"].append(raw)
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self.headline_hierarchy[-1]["delimiters"].append(line)
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def add_property_drawer_line(self, linenum: int, line: str, match: re.Match) -> int:
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self.current_drawer = self.headline_hierarchy[-1]["properties"]
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@ -908,6 +1033,12 @@ class OrgDomReader:
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self.add_raw_line(linenum, line)
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elif m := HEADLINE_RE.match(line):
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self.add_headline(linenum, m)
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# Org-babel
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elif m := BEGIN_SRC_RE.match(line):
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self.add_begin_src_line(linenum, m)
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elif m := END_SRC_RE.match(line):
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self.add_end_src_line(linenum, m)
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# Generic properties
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elif m := KEYWORDS_RE.match(line):
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self.add_keyword_line(linenum, m)
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elif m := PROPERTY_DRAWER_RE.match(line):
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@ -920,11 +1051,6 @@ class OrgDomReader:
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self.add_results_drawer_line(linenum, line, m)
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elif m := NODE_PROPERTIES_RE.match(line):
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self.add_node_properties_line(linenum, m)
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# Org-babel
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elif m := BEGIN_SRC_RE.match(line):
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self.add_begin_src_line(linenum, m)
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elif m := END_SRC_RE.match(line):
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self.add_end_src_line(linenum, m)
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# Not captured
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else:
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self.add_raw_line(linenum, line)
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@ -9,13 +9,15 @@
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:CREATED: [2020-01-01 Wed 01:01]
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:END:
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#+BEGIN_SRC shell
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#+BEGIN_SRC shell :results verbatim
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echo "This is a test"
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echo "with two lines"
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exit 0 # Exit successfully
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#+END_SRC
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#+RESULTS:
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: This is a test
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: with two lines
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* Second item
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:PROPERTIES:
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@ -25,10 +27,12 @@ exit 0 # Exit successfully
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#+BEGIN_SRC shell :results drawer
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echo "This is another test"
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echo "with two lines too"
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exit 0 # Comment
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#+END_SRC
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#+RESULTS:
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:results:
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This is another test
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with two lines too
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:end:
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@ -260,14 +260,21 @@ class TestSerde(unittest.TestCase):
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self.assertEqual(len(snippets), 2)
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self.assertEqual(
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snippets[0].content,
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'echo "This is a test"\n' + "exit 0 # Exit successfully",
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'echo "This is a test"\n'
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+ 'echo "with two lines"\n'
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+ "exit 0 # Exit successfully",
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)
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self.assertEqual(
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snippets[0].result,
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"This is a test",
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"This is a test\n" + "with two lines",
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)
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self.assertEqual(
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snippets[1].content, 'echo "This is another test"\n' + "exit 0 # Comment"
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snippets[1].content,
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'echo "This is another test"\n'
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+ 'echo "with two lines too"\n'
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+ "exit 0 # Comment",
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)
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self.assertEqual(
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snippets[1].result, "This is another test\n" + "with two lines too"
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)
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self.assertEqual(snippets[1].result, "This is another test")
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